rs11740825 chr5:16690198 A>T
- Sequence
actactatttacaatgcatttgca[A/T]catactagctattgtaagtaatct
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.96 | 0.34 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, hdl cholesterol change with statins, obesity with early age of onset (age >2), total cholesterol, waist hip ratio