rs11740965 chr5:132501399 T>C
- Sequence
atatggaaaaccaacccctttccc[T/C]cctctagcaggcggaagtttaggg
- ASB in cell types
- THP-1 (acute monocytic leukemia) epidermal keratinocytes HCT-116 (colon carcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.43 | 0.24 | 1.08 | n/a | n/a | |||
| CTCF_HUMAN | 0.90 | 0.56 | 1.15 | -0.57 | Weak Concordant |
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Motif analysis
