rs117445091 chr22:30256023 C>T
- Sequence
ctgcccagcgggcagcaggccctg[C/T]ggccacggccccgccagccccagg
- ASB in cell types
- WA09 (embryonic stem cells) UCLA1 hESCs 22RV1 (prostate carcinoma)
- ASB for transcription factors
- AP2C_HUMAN SMC1A_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2C_HUMAN | 3.49 | -3.63 | 1.00 | -1.90 | Weak Concordant | |||
| SMC1A_HUMAN | 2.91 | 0.16 | 1.25 | n/a | n/a | |||
| ANDR_HUMAN | 2.71 | -1.91 | 2.00 | n/a | No Hit |
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Motif analysis
