rs117446145 chr9:85805687 T>G
- Sequence
cggctcgacagcgctcccctcggc[T/G]cctagggtggcggggactcggcct
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) HCT-116 (colon carcinoma) LNCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| LNCaP C4-2B (prostate carcinoma) | 1.35 | -0.26 | 1.00 | |||
| HCT-116 (colon carcinoma) | 1.10 | -0.45 | 1.20 | |||
| LNCaP (prostate carcinoma) | 1.63 | n/a | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Nucleus_accumbens_basal_ganglia, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid