rs11745100 chr5:10453021 A>G

Sequence
ttgacaccaggaatcatgctgtgc[A/G]tcactgcgggttcctgcctgtctc
ASB in cell types
HEK293 (embryonic kidney) THP-1 (acute monocytic leukemia) GBM39 (Human brain tumor) spleen
ASB for transcription factors
SMC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMC3_HUMAN 0.14 2.64 1.000.02 1.67 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP age at death with kuru exposure,  comorbid depressive syndrome and alcohol dependence,  microalbuminuria,  urinary albumin-to-creatinine ratio,  waist hip ratio
GTEx eQTL Artery_Aorta,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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