rs11745573 chr5:1801318 A>G
- Sequence
ccccgacccgcgctccccgccccc[A/G]gggcgaaataaataccgggtgttt
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) HS-SY-2(Monophasic synovial sarcoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- TYY1_HUMAN CTCF_HUMAN ANDR_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | n/a | 3.41 | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.14 | 0.26 | 1.04 | -2.09 | Concordant | |||
| ANDR_HUMAN | -1.83 | 3.03 | 2.00 | n/a | No Hit | |||
| NRF1_HUMAN | 2.64 | 0.15 | 1.75 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.10 | -3.73 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood