rs117476389 chr21:36990170 A>G
- Sequence
gccccgacttacttctgaggccga[A/G]acgcggccgctcctgcgccgggtg
- ASB in cell types
- foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line) transverse colon BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- CTCF_HUMAN GCR_HUMAN STAG1_HUMAN KDM2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.20 | 0.39 | 1.32 | n/a | No Hit | |||
| GCR_HUMAN | 1.29 | 0.61 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.10 | -0.10 | 1.08 | n/a | n/a | |||
| KDM2B_HUMAN | 1.63 | -0.71 | 1.00 | n/a | n/a | |||
| KDM6A_HUMAN | 2.32 | n/a | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Vagina, Whole_Blood