rs117481827 chr19:1021628 T>C

Sequence
aattcgtgaagcgttccatatttt[T/C]gctgtagtctacagctcgtcacct
ASB in cell types
K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
ASB for transcription factors
GABP1_HUMAN ATF3_HUMAN TCF21_HUMAN RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN n/a 1.58 1.004.9·10-11 4.00 n/a n/a
ATF3_HUMAN 0.82 0.86 0.795.0·10-4 1.60 n/a No Hit
TCF21_HUMAN 1.81 -3.20 5.4·10-31.00 1.50 0.23 Weak Discordant
RBBP5_HUMAN 2.26 -4.50 0.021.00 2.00 n/a n/a
GMEB1_HUMAN n/a 1.83 1.000.02 2.00 n/a No Hit
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Motif analysis

TCF21_HUMAN Weak Discordant
TCF21_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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