rs117486106 chr17:56833667 C>G
- Sequence
cggtgccgcgcaggccgcctcccc[C/G]cctcgcttcccagtcggcttacgc
- ASB in cell types
- HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN ZN341_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a | |||
| ZN341_HUMAN | 2.25 | n/a | 2.00 | -1.65 | Weak Concordant | |||
| ANDR_HUMAN | 2.69 | 0.00 | 1.75 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid