rs11749386 chr5:37837548 G>A

Sequence
agccgctcgccgcgaggcacttct[G/A]agttcccggcagcagggggcacca
ASB in cell types
GBM39 (Human brain tumor) H929 (plasma cell myeloma) CD34+ hematopoietic stem cells neutrophils from periferal blood
ASB for transcription factors
SMC3_HUMAN TIF1B_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMC3_HUMAN 1.30 -0.41 1.8·10-31.00 1.67 n/a n/a
TIF1B_HUMAN 0.20 2.89 0.698.5·10-3 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts

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