rs11749648 chr5:191169 C>T

Sequence
gacctgcccgctggcctcaccggc[C/T]gccagcacgaacgcctgccaagac
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.76 -0.46 0.011.00 2.00 n/a No Hit
ANDR_HUMAN 2.48 -1.70 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  rheumatoid arthritis,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Stomach,  Whole_Blood

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