rs11752345 chr6:159727316 C>T
- Sequence
gcgggcgagtgactgcggccacgc[C/T]tgaaaggcgactctcctgtgagtg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood primary B-CLL cells
- ASB for transcription factors
- BRD4_HUMAN FOXK2_HUMAN SRBP2_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.18 | 0.28 | 1.58 | n/a | n/a | |||
| FOXK2_HUMAN | 2.54 | -4.49 | 1.50 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.54 | -1.75 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.31 | 1.96 | 1.83 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood