rs11757171 chr6:54621352 A>G

Sequence
tgtgcaggtggttacttttattct[A/G]cagatgagaaaattgaagtacaga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 3.03 n/a 2.5·10-71.00 1.11 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  paternal transmission distortion,  total cholesterol
GTEx eQTL Adipose_Visceral_Omentum,  Esophagus_Mucosa,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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