rs117574138 chr17:45371815 C>G
- Sequence
gcccacccgctccccgccgattgg[C/G]gaggccgcattcctgcgcgctgcc
- ASB in cell types
- HEK293T (embryonic kidney) HCASMC (Human coronary artery smooth muscle cells) breast tumor
- ASB for transcription factors
- IKZF3_HUMAN TCF21_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF3_HUMAN | -3.23 | 2.11 | 1.50 | n/a | n/a | |||
| TCF21_HUMAN | 2.39 | n/a | 4.00 | n/a | No Hit | |||
| ZFX_HUMAN | -3.40 | 1.44 | 1.88 | -0.49 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood