rs11759458 chr6:37818983 C>T
- Sequence
gctccagggaccttgactccgacg[C/T]ccccgggaagccagagctccactt
- ASB in cell types
- HepG2 (hepatoblastoma) tibial nerve A549 (lung carcinoma) HCC1806(Squamous cell breast carcinoma, acantholytic variant)
- ASB for transcription factors
- TYY1_HUMAN BRD2_HUMAN CTCF_HUMAN MAF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.53 | 2.39 | 1.88 | n/a | No Hit | |||
| BRD2_HUMAN | -1.53 | 2.25 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 3.38 | 0.63 | 1.00 | -3.19 | Concordant | |||
| MAF_HUMAN | 2.35 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.15 | 0.09 | 1.88 | n/a | No Hit |
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Motif analysis
