rs11761922 chr7:50304536 G>C
- Sequence
ccggcgcggagggggccaggtacg[G/C]ggcccgcgggcggcgctgtgcgcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 2588 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.23 | 1.68 | 1.25 | 1.32 | Weak Concordant | |||
| STAG1_HUMAN | -1.27 | 2.05 | 1.07 | n/a | n/a |
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Motif analysis
