rs11762834 chr7:1856005 C>T

Sequence
gtctgctgaggggaggcacttcct[C/T]gcggtgcgctcacgtggggtgcgg
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia)
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.09 0.30 4.4·10-31.00 2.00 -1.61 Weak Concordant
Items per page:
1 – 1 of 1

Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP adiponectin levels,  obesity with early age of onset (age >2),  triglycerides,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid

Download