rs11769256 chr7:151028885 C>T
- Sequence
ccacgcccagtccgcactcccgac[C/T]gggggtcccctttcctggccctgg
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ANDR_HUMAN HCFC1_HUMAN NFXL1_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.68 | -0.13 | 1.67 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.50 | n/a | 2.00 | n/a | n/a | |||
| NFXL1_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.19 | 1.39 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood