rs11771145 chr7:143413669 G>A

Sequence
gatttgcctgtttttaaactttat[G/A]aaacggaatcatctgatatgcatt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN -1.46 1.94 1.000.03 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI alzheimers disease (late onset),  alzheimers disease or family history of alzheimers disease
GRASP 2 hour glucose,  alzheimers disease,  eye color,  late onset alzheimers disease
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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