rs11771382 chr7:37902377 C>G

Sequence
agctactttggatgacctccaaag[C/G]caaacattttatgcattccaaaaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NFE2_HUMAN ATF2_HUMAN MAFG_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFE2_HUMAN -1.96 1.76 1.005.5·10-8 1.75 n/a No Hit
ATF2_HUMAN n/a 2.86 1.004.6·10-5 2.00 n/a No Hit
MAFG_HUMAN n/a 1.06 1.007.6·10-4 2.00 n/a No Hit
IKZF1_HUMAN -1.39 2.50 1.002.2·10-3 2.00 n/a n/a
NFIC_HUMAN n/a 1.91 1.007.5·10-3 2.00 -4.31 Discordant
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Motif analysis

NFIC_HUMAN Discordant
NFIC_HUMAN pic

Genetic associations

GRASP cystatin c in serum,  height
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Thyroid,  Whole_Blood

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