rs11771607 chr7:156909247 T>C

Sequence
cgttctcccctgctcctggggcct[T/C]ggagccatctcttttcttgaaagg
ASB in cell types
K562 (myelogenous leukemia) RWPE2 A549 (lung carcinoma)
ASB for transcription factors
MGAP_HUMAN RAD21_HUMAN LMBL2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MGAP_HUMAN 2.49 n/a 8.4·10-51.00 1.50 n/a No Hit
RAD21_HUMAN 1.20 -0.16 1.7·10-31.00 1.54 n/a n/a
LMBL2_HUMAN 1.93 -3.42 0.021.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  hdl cholesterol,  mitral annular calcium
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis

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