rs11772187 chr7:129371022 C>T
- Sequence
agccacttagccaagaaagctaac[C/T]tctgagcaccctctagtgtattgc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) transverse colon HUES64 (embryonic stem cells) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.50 | 0.30 | 1.45 | n/a | No Hit | |||
| RAD21_HUMAN | 1.68 | -1.55 | 1.10 | n/a | n/a | |||
| STAG1_HUMAN | 2.03 | -0.22 | 1.11 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid