rs11772895 chr7:143384849 G>C
- Sequence
ggggaaatggtttggacgggaaga[G/C]gaggggtccagctgtcaacgtttt
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) MDM(monocyte derived macrophages) CD14+ monocytes MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.04 | 0.84 | 1.34 | -1.34 | Weak Concordant | |||
| STAT1_HUMAN | 1.63 | -0.74 | 3.00 | -0.53 | Weak Concordant | |||
| CDK8_HUMAN | 1.93 | -0.70 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood