rs117749248 chr8:17246516 C>T
- Sequence
aaccccttgacaaacccccagccc[C/T]agttacccagcccccaacccgccg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- IKZF1_HUMAN CREB1_HUMAN PRDM9_HUMAN GLIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.70 | 2.05 | 1.00 | n/a | n/a | |||
| CREB1_HUMAN | -2.29 | 1.56 | 1.50 | n/a | No Hit | |||
| PRDM9_HUMAN | -2.11 | 2.60 | 1.00 | n/a | No Hit | |||
| GLIS2_HUMAN | -1.66 | 2.71 | 2.00 | 0.72 | Weak Concordant | |||
| RBM25_HUMAN | 1.36 | 0.69 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Spleen, Stomach, Testis, Thyroid, Whole_Blood