rs11775316 chr8:39960931 C>T
- Sequence
cgagtagctgggactacaggtgcc[C/T]gccaacacgcccagctaatttttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN REQU_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.98 | -2.78 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.44 | -2.09 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.63 | -0.74 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal