rs117871222 chr7:33109644 G>A
- Sequence
ggctgctgcgggtgggtggggagc[G/A]ccgcctagctggagccgaagcggg
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.63 | -1.03 | 2.07 | -2.85 | Concordant | |||
| STAG1_HUMAN | 1.69 | -2.19 | 1.42 | n/a | n/a |
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Motif analysis
