rs117874450 chr10:13347291 C>T
- Sequence
ccggacctacctccccgccggccc[C/T]gcacaatggggcgcgctctccagg
- ASB in cell types
- primary B-CLL cells BEAS-2B (bronchial epithelium) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN RFOX2_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.68 | 1.93 | 1.00 | n/a | No Hit | |||
| RFOX2_HUMAN | -1.78 | 1.97 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.64 | 0.28 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid