rs117970118 chr19:42243078 G>C
- Sequence
tctcaggtggtttttaagccccag[G/C]tggatactgcagttccggagatgg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) germinal center CD77+ B cells MCF7 (Invasive ductal breast carcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- ESR1_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.10 | 0.98 | 2.41 | n/a | No Hit | |||
| SPI1_HUMAN | 0.25 | 0.91 | 1.06 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Pancreas, Testis