rs118008022 chr20:62791555 C>G
- Sequence
tctgaaagctgagagtggccccct[C/G]gtggtgggcaggttcccagggaac
- ASB in cell types
- T47D (invasive ductal carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN ZGPAT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.18 | 2.06 | 1.89 | 3.11 | Concordant | |||
| ZGPAT_HUMAN | -2.24 | 2.60 | 1.00 | n/a | n/a |
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Motif analysis
