rs11803622 chr1:44731005 C>T
- Sequence
gttcaaacaaaatgttgtctcaca[C/T]ctcgcaacaaacacacaactttct
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) HCT-116 (colon carcinoma) breast tumor
- ASB for transcription factors
- BRD4_HUMAN TBX3_HUMAN ESR1_HUMAN ILF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.04 | 0.50 | 1.31 | n/a | n/a | |||
| TBX3_HUMAN | 2.54 | -1.42 | 1.00 | -5.78 | Concordant | |||
| ESR1_HUMAN | 3.17 | n/a | 1.50 | n/a | No Hit | |||
| ILF3_HUMAN | -0.64 | 0.67 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | 1.35 | -1.04 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood