rs118067188 chr6:166313478 G>A
- Sequence
agcacacgcttccctccatgccgg[G/A]gggggggggtcccaatttctttgg
- ASB in cell types
- K562 (myelogenous leukemia) GM18505 (female B-cells Lymphoblastoid Cell Lines) GM02255 (Lymphoblastoid Cell Lines) stem and progenitor cells
- ASB for transcription factors
- CTCF_HUMAN MNT_HUMAN SMCA4_HUMAN E4F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.16 | 1.59 | 1.18 | 1.15 | Weak Concordant | |||
| MNT_HUMAN | -0.91 | 2.80 | 1.00 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.89 | 2.14 | 2.67 | n/a | n/a | |||
| E4F1_HUMAN | n/a | 2.67 | 1.00 | 3.65 | Concordant | |||
| NFIC_HUMAN | -2.04 | 2.44 | 1.00 | n/a | No Hit |
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Motif analysis
