rs118085015 chr19:1863885 T>C

Sequence
agcgtcttaggcccggagcgcgcc[T/C]tctccgcgctagggtgcaaggccg
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 0.28 2.33 1.000.02 1.50 n/a No Hit
ESR1_HUMAN 0.54 2.58 0.670.02 1.67 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download