rs118091633 chr21:36990236 T>C

Sequence
gccgcgccgcgctgcgccctctcg[T/C]ggcccgcctggtggtgcaactggg
ASB in cell types
foreskin keratinocyte sigmoid colon OCI-LY7 (diffuse large B-cell lymphoma) BEAS-2B (bronchial epithelium)
ASB for transcription factors
CTCF_HUMAN GCR_HUMAN STAT1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.39 0.46 1.6·10-251.00 1.37 -2.32 Concordant
GCR_HUMAN 1.02 -0.20 4.1·10-41.00 1.00 n/a No Hit
STAT1_HUMAN 2.28 -1.37 1.3·10-31.00 1.50 n/a No Hit
RAD21_HUMAN 1.24 -0.19 2.0·10-31.00 1.26 n/a n/a
ANDR_HUMAN 1.61 -0.15 7.7·10-31.00 1.50 n/a No Hit
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Vagina,  Whole_Blood

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