rs118093058 chr11:62646201 G>T
- Sequence
cgcaggctgcattccccgaggcca[G/T]gccgcatcttttcccccgccccga
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) primary B-CLL cells 22RV1 (prostate carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- ZFX_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.14 | -1.33 | 1.50 | -7.33 | Concordant | |||
| ANDR_HUMAN | 2.38 | -1.08 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
EMBL-EBI cognitive performance (mtag), educational attainment (mtag), educational attainment (years of education), highest math class taken (mtag)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood