rs118132909 chr12:132710735 G>T
- Sequence
ccacgaaaacgccccttcgcgcaa[G/T]gctgccccgcgtcctgccgcgccc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- ANDR_HUMAN SRBP2_HUMAN EP400_HUMAN ILF3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.58 | -1.59 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.38 | n/a | 3.00 | n/a | No Hit | |||
| EP400_HUMAN | n/a | 1.83 | 2.00 | n/a | n/a | |||
| ILF3_HUMAN | -0.87 | 1.97 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood