rs11879272 chr19:1021841 C>A
- Sequence
agcaatgaataaataagtgctctt[C/A]aggggcacttactgagtgccggct
- ASB in cell types
- HEK293 (embryonic kidney) GM19239 (male B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- ESR1_HUMAN ZBT11_HUMAN ZN624_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.93 | -5.44 | 2.00 | -0.80 | Weak Concordant | |||
| ZBT11_HUMAN | -1.98 | 2.78 | 2.00 | n/a | n/a | |||
| ZN624_HUMAN | -2.84 | 2.74 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.97 | 1.91 | 1.33 | n/a | No Hit |
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Motif analysis
