rs12011 chr3:184711930 A>G
- Sequence
agcggcagtgacggcgggagtaca[A/G]ggagcaatggcagcgggagctttg
- ASB in cell types
- SUM159PT (Triple negative breast cancer) MOLT-4 (Adult T acute lymphoblastic leukemia) GSC23 (Glioblastoma)
- ASB for transcription factors
- SMAD3_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD3_HUMAN | 0.28 | 2.46 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | 0.71 | 1.30 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Whole_Blood