rs12030094 chr1:223886714 C>G
- Sequence
catgtttgttttctagaacagagt[C/G]aaatggtttgcttaaatcattgca
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN NR1H4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.13 | 2.61 | 2.20 | 3.76 | Concordant | |||
| FOXA1_HUMAN | 0.54 | 2.08 | 1.47 | n/a | No Hit | |||
| A2NVP9_HUMAN | -5.38 | 3.82 | 1.50 | n/a | n/a | |||
| NR1H4_HUMAN | 1.43 | -0.30 | 3.00 | n/a | No Hit | |||
| MTOR_HUMAN | n/a | 2.49 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood