rs12045375 chr1:16624394 G>A
- Sequence
ttctcccgggccacttgccccagc[G/A]tctccacctgtcactgggcctccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Peyer's patch Ishikawa (endometrial adenocarcinoma) breast tumor
- ASB for transcription factors
- ESR1_HUMAN PAX2_HUMAN CTCF_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.84 | -0.09 | 2.89 | n/a | No Hit | |||
| PAX2_HUMAN | 3.36 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.99 | -0.01 | 3.04 | n/a | No Hit | |||
| BRD4_HUMAN | 2.33 | -2.26 | 2.00 | n/a | n/a | |||
| DNM3B_HUMAN | 2.17 | -1.70 | 1.00 | n/a | n/a |
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Motif analysis
