rs12092734 chr1:11908349 T>C
- Sequence
atgtaaagtgtattatagaacaaa[T/C]gcgagttacggtttttcagctttt
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) HeLa-LTR-Luciferase cells LY-1 (Diffuse Large B-Cell Lymphoma)
- ASB for transcription factors
- TYY1_HUMAN BRD4_HUMAN SPT5H_HUMAN MBD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.23 | 3.88 | 1.75 | n/a | No Hit | |||
| BRD4_HUMAN | 1.36 | -0.01 | 1.82 | n/a | n/a | |||
| SPT5H_HUMAN | 1.32 | -0.44 | 1.75 | n/a | n/a | |||
| MBD4_HUMAN | 1.73 | 0.34 | 1.78 | n/a | n/a | |||
| PML_HUMAN | 2.54 | -4.38 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Spleen, Testis, Thyroid, Whole_Blood