rs12116841 chr1:94698170 G>A
- Sequence
gaggtaacaggctgccttcagcct[G/A]ttcaattattacaagctatgtaac
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RXRB_HUMAN SOX5_HUMAN MIXL1_HUMAN NFIL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRB_HUMAN | 3.21 | -3.55 | 1.00 | n/a | No Hit | |||
| SOX5_HUMAN | 2.17 | -1.93 | 1.00 | n/a | No Hit | |||
| MIXL1_HUMAN | 2.67 | -2.41 | 1.00 | 2.89 | Discordant | |||
| NFIL3_HUMAN | 1.94 | -3.32 | 1.50 | n/a | No Hit | |||
| TBX3_HUMAN | 2.04 | -1.12 | 1.00 | n/a | No Hit |
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Motif analysis
