rs12121540 chr1:85200473 T>G
- Sequence
ggcctgaggaaggaggggccttcc[T/G]ggcggtctcctttgccactgcgta
- ASB in cell types
- HEK293 (embryonic kidney) keratinocytes HEK293T (embryonic kidney) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- ZFX_HUMAN SNAI2_HUMAN IKZF3_HUMAN SUZ12_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 0.39 | 2.39 | 1.17 | n/a | No Hit | |||
| SNAI2_HUMAN | 3.26 | n/a | 1.50 | n/a | No Hit | |||
| IKZF3_HUMAN | -2.00 | 2.94 | 2.00 | n/a | n/a | |||
| SUZ12_HUMAN | -0.84 | 1.93 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood