rs12132219 chr1:16905254 G>A

Sequence
aagtggtttactgtaaggctgagg[G/A]ctatgcattctatggctatgttgt
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) Jurkat (T-cells) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ZN316_HUMAN MNT_HUMAN MTA3_HUMAN T2FA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN316_HUMAN 2.35 n/a 3.7·10-151.00 4.00 n/a No Hit
MNT_HUMAN 2.04 -4.33 4.1·10-51.00 2.67 n/a No Hit
MTA3_HUMAN 3.50 n/a 5.5·10-51.00 3.00 n/a n/a
T2FA_HUMAN 1.29 n/a 1.4·10-41.00 3.00 n/a n/a
NFAC3_HUMAN 1.32 n/a 4.2·10-41.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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