rs12143847 chr1:6183672 T>A
- Sequence
aacaggcagtcctcacctccttcc[T/A]gtaggtggagggctacctccttgc
- ASB in cell types
- GM02630 (Fanconi anemi) GM02610 (Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.48 | 2.42 | 1.06 | 2.64 | Concordant |
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Motif analysis
