rs12151640 chr2:152755111 G>A
- Sequence
gccatacagagataggagctgagg[G/A]gacatagtgagaagtaaccagaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- KAISO_HUMAN IKZF2_HUMAN STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | 3.65 | -3.53 | 1.00 | 0.64 | Weak Discordant | |||
| IKZF2_HUMAN | -2.69 | 2.77 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.46 | 2.53 | 1.25 | n/a | n/a | |||
| CTCF_HUMAN | 0.30 | 2.42 | 1.17 | n/a | No Hit |
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Motif analysis
