rs12151738 chr2:130377276 A>G

Sequence
tttctgtttcctaactctcgattc[A/G]gtgcttttttcacatactcccaag
ASB in cell types
MS-1 (Small cell lung carcinoma)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 2.49 -2.10 6.5·10-31.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP college completion,  maternal transmission distortion,  mitral annular calcium,  neuroblastoma (brain cancer),  transmission distortion
GTEx eQTL Esophagus_Mucosa,  Heart_Left_Ventricle,  Prostate,  Skin_Sun_Exposed_Lower_leg

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