rs12152436 chr3:69321245 C>T
- Sequence
caacggggtcgtcttacaaggcaa[C/T]aggaaatagctacaaaaaaagacc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MEF2B_HUMAN ELF1_HUMAN IKZF2_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 3.27 | -3.41 | 1.25 | n/a | No Hit | |||
| ELF1_HUMAN | 3.02 | -3.01 | 1.00 | -3.34 | Concordant | |||
| IKZF2_HUMAN | 2.08 | -3.29 | 1.50 | n/a | n/a | |||
| SRF_HUMAN | 2.14 | -4.05 | 1.50 | 0.73 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, mitral annular calcium, sporadic creutzfeldt-jakob disease, tetrology of fallot, transmission distortion, waist hip ratio