rs12154613 chr7:111562445 G>T
- Sequence
gccccccacccgccgccggacgcc[G/T]ggcgcccgccctccgcacccgctg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) tibial nerve
- ASB for transcription factors
- NELFA_HUMAN NRF1_HUMAN EP300_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFA_HUMAN | 1.23 | n/a | 1.50 | n/a | n/a | |||
| NRF1_HUMAN | 0.69 | 0.49 | 1.75 | -0.86 | Weak Concordant | |||
| EP300_HUMAN | -1.71 | 2.04 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -0.50 | 2.33 | 1.83 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.82 | -1.28 | 1.00 | n/a | n/a |
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Motif analysis
