rs12155411 chr7:38222731 A>G
- Sequence
tccttgagtcaggaaggtaaacaa[A/G]aacaaaacattttcatggtgttcc
- ASB in cell types
- 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) D54 (H54, Human glioblastoma) hepatocytes
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN FOXA1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.65 | 1.22 | 1.46 | n/a | No Hit | |||
| ANDR_HUMAN | 0.03 | 1.91 | 2.18 | 5.60 | Concordant | |||
| FOXA1_HUMAN | -0.72 | 2.02 | 1.71 | -1.38 | Weak Discordant | |||
| FOXA2_HUMAN | -1.90 | 2.22 | 2.50 | 0.48 | Weak Concordant | |||
| FOXK2_HUMAN | n/a | 2.40 | 1.00 | -3.63 | Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood