rs12163129 chr22:50399486 C>T
- Sequence
actgccaggttaaacaccgcctcc[C/T]gcaacctgttagccttggaggtca
- ASB in cell types
- pancreas
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.03 | 1.68 | 1.03 | 0.48 | Weak Concordant | |||
| ANDR_HUMAN | 2.51 | -4.74 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid